Allen Institute Cell Lineage Reconstruction DREAM Challenge
Registration Opens: September, 2019
Launch: Mid-October, 2019
Final Submissions: January, 2020
Winners Announced: March, 2020
CRISPR-based molecular tools allow the reconstruction of cell lineages based on the phylogenetic analysis of DNA mutations induced by CRISPR during development. The challenge - a partnership between The Allen Institute and DREAM - will comprise 3 subchallenges focused on reconstructing cell lineage trees of different sizes and nature. Through the usage for training purposes of experimental and in silico generated data sets, the goal of this challenge is to mobilize a larger community for evaluating new optimal tree-building methods.
The EHR DREAM Challenge
Launch October 9, 2019
Final submissions January 9, 2020
Results announced February 9, 2020
The goals of the EHR DREAM Challenge are to prospectively predict patient health outcomes in order to 1) lower the barriers to piloting innovative machine learning and data science methods in healthcare, 2) establish clinically relevant prediction benchmarks and evaluation metrics, and 3) minimize the distance between model developers and the clinic to reduce the time for model implementation.
Single Cell Signaling in Breast Cancer
Launch: August 2, 2019 (now open)
Webinar: August 20, 2019
This challenges uses genomic, transcriptomic, and proteomic measurements to evaluate signaling responses of 67 well-characterized breast cell lines to drug treatment at the single-cell level to better understand single-cell signaling and signaling modeling.
Tumor Deconvolution DREAM Challenge
Preterm Birth Prediction: Transciptomics DREAM Challenge
Sub-challenge 1: May 4-Aug 15, 2019 (closed)
Top performers announced: September 13, 2019
Sub-challenge 2: Aug 15, 2019 - Dec 5, 2019 (Register now)
Top performers announced: January 3, 2020
Using whole blood gene expression data collected from pregnant women, participants will develop models to predict gestational age at blood draw and risk of preterm birth.
If you have an idea for a DREAM challenge, please contact us here.