DREAM Publications
May 29, 2015

2015 Publications

Eduati F, Mangravite LM, et al; Prediction of human population responses to toxic compounds by a collaborative competition; Nature Biotechnology (2015) doi:10.1038/nbt.3299

Jonathan R. Karr, Williams A, Zucker J, et al; Summary of the DREAM8 Parameter Estimation Challenge: Toward Parameter Identification for Whole-Cell Models; 
PLoS Comput Biol (2015) DOI: 10.1371/journal.pcbi.1004096

Ewing AD, Houlahan KE, et. al; Combining tumor genome simulation with crowdsourcing to benchmark somatic single-nucleotide-variant detection.
Nat Methods. (2015) doi: 10.1038/nmeth.3407.

Abdallah K, Hugh-Jones C, Norman T, Friend S, Stolovitzky G.; The Prostate Cancer DREAM Challenge: A Community-Wide Effort to Use Open Clinical Trial Data for the Quantitative Prediction of Outcomes in Metastatic Prostate Cancer; Oncologist. (2015)  doi: 10.1634/theoncologist.2015-0054.

Boutros PC, Ewing AD, et al.; Global optimization of somatic variant identification in cancer genomes with a global community challenge.; Nat Genet. (2014)  doi: 10.1038/ng.2932.

Boutros PC, Margolin AA, Stuart JM, Califano A, Stolovitzky G.; Toward better benchmarking: challenge-based methods assessment in cancer genomics;. Genome Biol. (2014)  doi: 10.1186/s13059-014-0462-7.